Publications

Jinhong Du, Ming Gao, Jingshu Wang (2021). Model-based Trajectory Inference for Single-Cell RNA Sequencing Using Deep Learning with a Mixture Prior. BioRXiv.

Jingshu Wang, Qingyuan Zhao, Jack Bowden, Gilbran Hemani, George Davey Smith, Dylan S. Small, Nancy R. Zhang (2020). Causal Inference for Heritable Phenotypic Risk Factors Using Heterogeneous Genetic Instruments. bioRxiv.

Bowei Kang, Eroma Abeysinghe, Divyansh Agarwal, Quanli Wang, Sudhakar Pamidighantam, Mo Huang, Nancy R Zhang, Jingshu Wang (2020). Online Single-cell RNA-seq Data Denoising with Transfer Learning. PEARC20: Practice and Experience in Advanced Research Computing.

Paper SAVER-X Gateway

Jingshu Wang, Lin Gui, Weijie J. Su, Chiara Sabatti, Art B. Owen (2020). Detecting Multiple Replicating Signals using Adaptive Filtering Procedures. ArXiv.

Zilu Zhou, Chengzhong Ye, Jingshu Wang, Nancy R. Zhang (2020). Surface protein imputation from single cell transcriptomes by deep neural networks. Nature Communications.

Code Paper Preprint

Qingyuan Zhao, Jingshu Wang, Gibran Hemani, Jack Bowden, Dylan S. Small (2020). Statistical inference in two-sample summary-data Mendelian randomization using robust adjusted profile score. Annals of Statistics.

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Divyansh Agarwal, Jingshu Wang, Nancy R. Zhang (2020). Data Denoising and Post-Denoising Corrections in Single Cell RNA Sequencing. Statistal Science.

Qingyuan Zhao, Yang Chen, Jingshu Wang, Dylan S. Small (2019). Powerful genome-wide design and robust statistical inference in two-sample summary-data Mendelian randomization. International Journal of Epidemiology.

Qingyuan Zhao, Jingshu Wang, Wes Spiller, Jack Bowden, Dylan S. Small (2019). Two-Sample Instrumental Variable Analyses Using Heterogeneous Samples. Statistical Science.

Jingshu Wang, Divyansh Agarwal, Mo Huang, Gang Hu, Zilu Zhou, Chengzhong Ye, Nancy R. Zhang (2019). Data denoising with transfer learning in single-cell transcriptomics. Nature Methods.

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Jingshu Wang, Art B. Owen (2019). Admissibility in Partial Conjunction Testing. Journal of the American Statistical Association.

Jingshu Wang, Mo Huang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, John Murray, Arjun Raj, Mingyao Li, Nancy R. Zhang (2018). Gene expression distribution deconvolution in single-cell RNA sequencing. Proceedings of the National Academy of Sciences.

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Mo Huang, Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio, John I. Murray, Arjun Raj, Mingyao Li, Nancy R. Zhang (2018). SAVER: gene expression recovery for single-cell RNA sequencing. Nature Methods.

Code Paper Preprint

Jingshu Wang, Qingyuan Zhao, Trevor Hastie, Art B. Owen (2017). Confounder adjustment in multiple hypothesis testing. Annals of Statistics.

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Art B. Owen, Jingshu Wang (2016). Bi-Cross-Validation for Factor Analysis. Statistal Science.

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