Single-cell RNA sequencing

A Python package to jointly perform trajectory inference for multiple single-cell RNA sequencing datasets. [Paper](https://jingshuw.org/publication/du-2020-aa/).

An R package for denoising scRNA-seq observed UMI counts by transfer learning from existing scRNA-seq datasets. We also provide an open-to-public [science Gateway](https://singlecellgateway.wharton.upenn.edu/) for online computation. [Paper](https://jingshuw.org/publication/wang-2018-aa/)

An R package to estimate the underlying true gene expression distributions for each gene and a given cell group from noisy scRNA-seq observed UMI counts. DESCEND can also find genes whose dispersion (variance, Gini coefficient) change between cell groups. [Paper](https://jingshuw.org/publication/wang-2018-aa/)